Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs72659698 chr1:36314688 G/A 6.04E-14 515 21.27 29.17 3.02 KM Plot
HNSC rs72659701 chr1:36317380 C/T 6.66E-14 514 21.27 30.92 3.02 KM Plot
HNSC rs72661605 chr1:36326227 A/G 2.57E-11 510 21.27 33.1 3.73 KM Plot
HNSC rs72661607 chr1:36331411 G/C 2.57E-11 510 21.27 33.1 3.73 KM Plot
HNSC rs72661608 chr1:36333850 C/G 3.04E-11 511 21.27 32.88 3.73 KM Plot
HNSC rs72661613 chr1:36364781 A/G 3.78E-11 510 21.23 32.88 3.73 KM Plot
HNSC rs72661616 chr1:36370512 G/A 2.52E-11 514 21.27 32.67 3.73 KM Plot
HNSC rs72661623 chr1:36398368 G/A 2.13E-11 514 21.3 30.92 3.73 KM Plot
HNSC rs72661625 chr1:36401003 T/C 2.75E-11 512 21.27 29.17 3.73 KM Plot
HNSC rs72661628 chr1:36406547 A/G 2.6E-11 513 21.3 29.17 3.73 KM Plot
HNSC rs72661631 chr1:36417453 A/G 3.09E-11 512 21.3 28.3 3.73 KM Plot
HNSC rs72661632 chr1:36420715 G/A 3.09E-11 512 21.3 28.3 3.73 KM Plot
HNSC rs72661636 chr1:36426483 T/C 2.35E-11 511 21.33 30.92 3.73 KM Plot
HNSC rs72661640 chr1:36447232 T/G 2.54E-11 513 21.3 29.17 3.73 KM Plot
HNSC rs72661641 chr1:36448130 A/G 2.54E-11 513 21.3 29.17 3.73 KM Plot